Research Portfolio

My portfolio spans original scientific research and large-scale program leadership, across molecular biology, environmental policy tools, open-source software, and human-centered design. Across all of it, I bring the same approach: rigorous methods, cross-sector partnerships, and a commitment to work that outlasts any single grant or institution.

Plastic Pollution Policy2023 – present

Global Plastics AI Policy Tool

Developed open-source policy tools and predictive models to support UN plastic treaty negotiations. Our research demonstrated that four coordinated policies could reduce mismanaged plastic waste by 91% and greenhouse gases by one-third by 2050.

Briefed global and national delegations throughout the negotiations, with results presented at the World Economic Forum and New York Climate Week and published in Science. We are now extending this work to California's SB 54, a landmark law that shifts responsibility for reducing single-use packaging waste onto producers.

Data visualization of mismanaged plastic waste concentrated over an urban area
Panel at the UN Environment Programme plastic treaty negotiations

Biodiversity Monitoring2021 – present

eDNA · Camera Traps · Bioacoustics

The loss of biodiversity is one of the defining concerns of our time. I work to understand its patterns and how we can use novel technologies to monitor them and make decisions from what we find. Starting with eDNA and expanding to camera trap and bioacoustic data analysis, I have approached this work from an academic research perspective and in partnership with Indigenous and local communities, co-designing land management tools that integrate traditional ecological knowledge with modern data science.

My team focuses on building workflows that respect both the sensitivities surrounding biodiversity and the data privacy of communities, while holding to open science principles. With the California Wildlife Soundhub project, for example, we design governance strategies for the software and build the open infrastructure (see Jupyter Bioacoustic) that brings more flexibility and accessibility to bioacoustic analysis.

Radial chart of Karuk wildlife sightings by month and season, 2016–2024
Karuk Community Poster design by Amanda Anderson-You in collaboration with the Karuk Wildlife Team
Publication
Software
Partners

Karuk Tribe · CDFW · Geospatial Informatics Facility

Tools for the Montreal Protocol and Kigali Amendment2023 – present

Kigali Sim

Built Kigali Sim in partnership with the United Nations, a free, open-source modeling tool that helps policymakers optimize investments in reducing hydrofluorocarbon (HFC) emissions under the Montreal Protocol, without requiring coding expertise.

Beta tested with over a dozen countries, NGOs, and agencies. Officially launched December 2025. Conservative estimates suggest the tool could help middle-income nations reduce overall greenhouse gas emissions by approximately 5% by 2040.

Publication

Kigali Sim: an open-source Montreal Protocol toolkit — Journal of Open Source Software, 2026

Tools

Kigali Sim — open source tool for exploring policy interventions to reduce greenhouse gases

Partners

Multilateral Fund · UN Environment Programme · User Countries

Open & Democratize Geospatial Data2024 – 2026

GeoJupyter · JupyterGIS

Co-launched GeoJupyter to make geospatial data analysis accessible through open-source tools integrated with Jupyter's collaborative infrastructure. I led user research (40+ hours of interviews), organized in-person and virtual hackathons, and ran workshops with scientists and programmers to drive adoption and shape the platform's design.

A Nature publication used JupyterGIS for global carbon storage analysis, validating the tool's research readiness.

Tools

JupyterGIS — open source geospatial extension for Jupyter

Selected Conference Proceedings
Partners

Jupyter Community · UC Berkeley DSE

Biological & Environmental Data Collections 2018 – present

A cross-cutting theme in my work is making biological and environmental data collections FAIR: findable, accessible, interoperable, and reusable. I collaborate with research teams, software engineers, UX designers, and natural history institutions to maximize the scientific value of these resources and to build the infrastructure and community practices that make them last.

Cabinet of Curiosity blog — exploring the data of natural history
Cabinet of Curiosity — exploring the data of natural history

Data Science as a Practice 2017 – present

I study and shape how data science is practiced in academic research environments, developing standards for data management, reproducibility, and research ethics that teams can realistically adopt. I have co-authored peer-reviewed frameworks on data analysis workflows, led best-practices working groups at BIDS, and built training programs used across institutions. My goal is a research culture that is transparent, inclusive, and built to last.

Genome Evolution 2013 – 2020

During my NSF Postdoctoral Fellowship in Michael Eisen's lab at UC Berkeley, I led comparative computational genomic studies to characterize evolutionary constraints on cis-regulatory elements, including promoters and enhancers, and their role in directing spatiotemporal gene expression. I developed novel histological protocols and engineered transgenic Drosophila imaging lines to enable 4D confocal microscopy, producing new tools now available to the broader research community.

Genetic Regulation of Plant Morphology 2007 – 2021

I have led research into the genetic and molecular mechanisms that control plant form, encompassing flower morphology, wood development, leaf architecture, and phyllotactic patterning. My approach integrates wet-lab molecular biology with high-throughput computational phenotyping, enabling quantitative analysis of developmental processes at scale.

The Plant Cell journal cover, Volume 33, January 2021
Cover of The Plant Cell, January 2021
PNAS cover, Flower symmetry and pollination, February 2011
Cover of PNAS, February 2011